Detection of Caliciviruses in Water Samples by X. Jiang

Cover of: Detection of Caliciviruses in Water Samples | X. Jiang

Published by American Water Works Association .

Written in English

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  • Environmental Engineering & Technology,
  • Technology,
  • Technology & Industrial Arts,
  • Caliciviruses,
  • Viral pollution of water,
  • Science/Mathematics

Book details

The Physical Object
Number of Pages122
ID Numbers
Open LibraryOL12287888M
ISBN 101583211144
ISBN 109781583211144

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ISBN: OCLC Number: Notes: "Subject area: monitoring and analysis"--Cover. Description: xxiii, pages: illustrations ; 28 cm. (PDF) Concentration and Detection of Caliciviruses in Water Samples by Reverse Transcription-PCR | danielle laborde - is a platform for academics to share research papers.

Abstract Develops a molecular-based assay to detect a broad range of calicivirus strains. Applies the assay to environmental samples and determines the occurrence of caliciviruses in source, finished, and ground waters.

Published in Concentration and Detection of Caliciviruses in Water Samples by Reverse Transcription-PCR Article (PDF Available) in Applied and Environmental Microbiology 66(10) November with Detection of Caliciviruses in Water Samples.

Share this Resource. Related Resources. Subscriber Detection of Caliciviruses in Water Samples. Report # 08/01/ 08/01/ Subscriber Molecular Methods for Microsporidia Detection: Use of an.

We developed a method to concentrate and detect HuCVs in water samples by using a cultivable primate calicivirus (Pan-1) as a model. Viable Pan-1 was seeded in different types of water and then filtered with a 1MDS filter, eluted with beef extract (BE), and reconcentrated by polyethylene glycol (PEG) by: Human caliciviruses (HuCVs) cause waterborne outbreaks of gastroenteritis.

Seeding experiments were performed to evaluate individual steps, including concentration, reconcentration, and detection of CVs in water samples.

Different volumes of finished water (tap water), surface water (source water), and groundwater were seeded with Cited by: Detection and Occurrence of Human Caliciviruses in Drinking Water EPA Grant Number: R Title: Detection and Occurrence of Human Caliciviruses in Drinking Water Investigators: Sobsey, Mark D.

Institution: University of North Carolina at Detection of Caliciviruses in Water Samples book Hill EPA Project Officer: Nolt-Helms, Cynthia Project Period: January 1, through Decem water for all possible pathogens is complex, time-consuming, and expensive.

It is easy and inexpensive to test for coliform bacteria. If testing detects coliform bacteria in a water sample, water systems search for the source of contamination and restore safe drinking water.

There are three groups of. Detection rates vary for different countries, and are much lower than those of NoV and illness is milder. Environment, eating habits and hygiene practices likely play a role in the different attack rates. Caliciviruses are ubiquitous and stable in the environment, providing a persistent source of infection.

Concentration of water samples is a prerequisite for the detection of the low virus levels that are present in water and may present a public health hazard. The aim of this study was to develop a rapid, standardized molecular method for the detection of enteroviruses in large-volume surface water samples, using a concentration method suitable.

water samples and handling of sample preservatives. Follow the procedures described below to assist in the collection of an acceptable sample and to maintain the integrity of the sample after collection.

Prepare a Sampling and Analysis Plan (SAP) which describes the sampling. in water supplies, resulting in higher treatment costs and affecting the acceptability of the water to the consumers.

This problem can also lead to the erosion of public confidence in the water supply. The usual odors or off-flavors are earth-musty, moldy, fishy, grassy or “septic.” The most difficult odors to deal with are those involving the. Flow charts that summarize procedures for sample preparation, extraction, and analysis are given in Figure 1 for aqueous and solid samples, Figure 2 for multi-phase samples, and Figure 3 for tissue samples.

Extraction (Section 12) Aqueous samples (samples containing less than one percent solids) – Stable. Currently, Real Time-reverse transcription-PCR (RT-rt-PCR) is used to detect these viruses from water samples (Butot et al.,Dubois et al., ). In the first analytical step of the concentration method, positively or negatively charged filtration membranes were used for absorbing viruses from a large volume of water.

Chromatographic separation, detection, and quantification of the pesticides from the sediment-sample extracts are done by using gas chromatography with mass spectrometry (GC/MS). Recoveries in test sediment samples fortified at 10 micrograms per kilogram (µg/kg) dry weight ranged from 75 to percent; relative standard deviations ranged from.

In vitro cultivation of caliciviruses indicates that these pathogens have been emerging periodically from ocean sources for 65 best-documented example of ocean caliciviruses causing disease in terrestrial species is the animal disease vesicular exanthema of swine (VES).Feline calicivirus (the only member of the group with a seemingly ubiquitous and continuous terrestrial presence.

HuCV are non-culturable and can only be detected in concentrated water samples using RT-PCR. Inthe participated in the investigation of two HuCV outbreaks in the state of Wyoming. The first outbreak was recorded at a wintertime vacation lodge in northern Wyoming and the second during the summer at a restaurant in central Wyoming.

WATER SAMPLING AND ANALYSIS 53 means of ensuring improvement; otherwise, the supply agency may object to a sample result on the grounds that water quality may have deteriorated in the household, beyond the area of responsibility of the supplier.

Nevertheless, fixed sample points are rare or unknown in some countries. Methods for Collection and Analysis of Water Samples By F. RAINWATER and L. THATCHER GEOLOGICAL SURVEY WATER-SUPPLY PAPER UNITED STATES GOVERNMENT PRINTING OFFICE, WASHINGTON: Caliciviruses are one of the most common causes of acute gastroenteritis.

Drinking water is one potential pathway for viral ingestion. Members of the Calicivirus family (Caliciviridae)are non-enveloped small viruses with single-stranded positive-sense RNA term Calicivirus includes four genera: (i) Norovirus, (ii) Sapovirus, (iii) Vesivirus, and (iv) Lagovirus.

Standard Practice for Sampling, Preservation and Mitigating Interferences in Water Samples for Analysis of Cyanide D - 16 Standard Test Method for Determination of Nonylphenol, p- tert -Octylphenol, Nonylphenol Monoethoxylate and Nonylphenol Diethoxylate in Environmental Waters by Liquid Chromatography/Tandem Mass Spectrometry.

Abstract. Human caliciviruses (HuCVs) and astroviruses are single-stranded RNA viruses that cause acute gastroenteritis in humans. HuCVs include several prototypes of small, round-structured viruses (SRSVs) as well as morphologically typical caliciviruses.

Detailed instructions for taking samples from grain lots and properly subdividing them for testing are given in the Grain Inspection Handbook - Book 1 and Mechanical Sampling Systems Handbook. Copies can be obtained by contracting the Grain Inspection, Packers and Stockyards Administration of the U.S.

Department of Agriculture, or by accessing. detection efforts should focus on that portion of the distribution system. Active leak detection is crucial in identifying unreported water leakage and losses in the distribution system. Finding and repairing water losses through an active leak detection program will reduce water loss and, in many cases, save substantial money.

Calicivirus, any virus belonging to the family Caliciviridae. Caliciviruses have nonenveloped virions (virus particles) that are about 35–39 nm (1 nm = 10−9 metre) in diameter.

They are icosahedral, with capsids (the protein shell surrounding the viral nucleic acids) composed of 32 capsomeres. The Calicivirus Pages at the Institute of Animal Health (UK) - Calicivirus news, labs that study calicivirus, links to other calicivirus pages, and more.

Virology web site created by the Garry Lab. Virus-related stuff on Dr. Siegel's web page. References. Belshe, Robert B.

Textbook of Human Virology. Mosby Year Book, pp. 10, Probability sampling (a term due to Deming, [Deming]) is a sampling porcess that utilizes some form of random selection.

In probability sampling, each unit is drawn with known probability, [Yamane, p3] or has a nonzero chance of being selected in the sample. [Raj, p10] Such samples are usually selected with the help of random numbers. Artur Rzeżutka, Marta Chrobocińska, Agnieszka Kaupke, Beata Mizak, Application of an Ultracentrifugation-based Method for Detection of Feline Calicivirus (a Norovirus Surrogate) in Experimentally Contaminated Delicatessen Meat Samples, Food Analytical Methods, /s, 1, 1, (), ().

before sampling; let water run for additional 2 to 3 min after treatment. Do not sample from leaking taps that allow water to flow over the outside of the tap. In sampling from a mixing faucet remove faucet attachments such as screen or splash guard, run hot water for 2 min, then cold water for 2 to 3 min, and collect sample as indicated abo ve.

• For samples of drinking-water, one tube with 50 ml of sample and five tubes with 10 ml of sample are inoculated and incubated. The results are compared with the values such as those given in Table (see later) to obtain the MPN.

Culture media and buffered dilution water Each part of the test requires a different type of medium. be completed and samples analyzed by the laboratory within 47 days of collection. Label all vials, place in a covered cooler with ice, and transport to the laboratory for analysis.

Samples should be kept at a stable temperature of 4 ± 2 degrees Celsius. Include a container of water for sample temperature verification (temperature blank).

Sampling and analysis occur along the milk processing train: from collection at farm level, to intake at the diary plant, the processing steps, and the end products.

Milk has a short shelf life; however, products such as milk powders have allowed a global industry to be developed. Quality control tests are vital to support activities for hygiene and food standards to meet regulatory and.

a surface water model, and MODFLOW, a ground water model, were used with an evapotranspiration (ET) code developed for the conditions of the study area (Ross and Tara, ). In this book, a panel of expert calicivirologists have selected the most important up-to-date research findings to produce timely and comprehensive reviews of the respective calicivirus field.

Each chapter gives the reader a brief introduction to the topic followed by a descriptive discussion of the past and present research areas. Topics include: norovirus epidemiology; calicivirus. This test method covers the determination of hardness in water by titration. This test method is applicable to waters that are clear in appearance and free of chemicals that will complex calcium or magnesium.

The lower detection limit of this test method is approximately 2 to 5 mg/L as CaCO 3; the upper limit can be extended to all concentrations by sample dilution.

Abstract. Caliciviruses are disseminated by the fecal-oral route and are found in contaminated surface and ground waters.

The US Environmental Protection Agency (EPA) is interested in preventing calicivirus contamination in treated waters used for consumption, and these viruses are on the EPA's “contaminant candidate list” for regulatory consideration in drinking waters.

In clinical laboratories, immunoglobulins are commonly used for the detection of viruses via methods such as the enzyme-linked immunosorbent assay.

Immunomagnetic separation has been commonly used for the concentration of enteric protozoan pathogens and viruses such as noroviruses and enteroviruses from water samples (19, 18, 30, 71).

In this. At a sampling rate of L/min the pressure drop across the tube is 10 in. of water. Sampling Procedure Apparatus Samples are collected with a personal sampling pump that can be calibrated to within ±5% of the recommended flow rate with the sampling device attached.

Water samples for amoeba testing should be transported in an insulated container at ambient (not chilled) temperature. Samples should be received in the laboratory no more than 96 hours after sampling.

For other microbiological sample types, refer to AS for sample transport times and. Water samples were collected from two sites, the River Atna and the Lake Jonsvatn.

C., Pompanon, F. & Taberlet, P. Species detection using environmental DNA from water samples. Kowada K, Takeuchi K, Hirano E, Toho M, Sada K. Development of a multiplex real-time PCR assay for detection of human enteric viruses other than norovirus using samples collected from gastroenteritis patients in Fukui Prefecture, Japan.

J Med Virol. Jan. 90 (1)  Novel strains of astroviruses, coronaviruses, and caliciviruses were detected and analyzed phylogenetically. Out of the tested samples, 40 (9%) bats were positive for at least one virus. Bat-transmitted astroviruses (BtAstV) were detected in eight species with a % detection rate (95% confidence interval [CI]).

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